Josh Schimel

(805) 893-7688
1108 Noble Hall
Schimel Lab


My research sits at the interface of ecosystem and microbial ecology. I am interested in the role of soil microbes in controlling ecosystem scale processes. I am particularly interested in the linkages between plant and soil processes, and how changes in microbial community structure affects ecosystem-scale dynamics. My work is now focusing on three ecosystems: the Arctic tundra in Alaska and Greenland, High elevation ecosystems in the Sierra Nevada, and the California annual grassland-oak savanna.

Work in the Arctic is focused on understanding the dynamics of soil organic matter. The Arctic is important in global climate since there is a lot of C stored in arctic soils and the Arctic is warming faster than the rest of the world. Increased temperatures could cause greater release of C into the atmosphere, producing a positive feedback on global climate. Alternatively, nutrient release from soil organic matter could enhance plant growth, making the Arctic a stronger sink for atmospheric CO2, and producing a negative feedback on climate. Which of these processes is more important depends on the nature of soil organic matter, its bioavailability, and what happens to the nutrients that are made available by decomposition. Within this framework I have projects studying the bioavailability of tundra soil C and N and how that varies throughout the year.

One important piece of understanding the Arctic is winter. Winter is long and cold, but it is not biologically dead. Winter activity accounts for a significant portion of total annual respiration, and may account for all of the annual net C efflux. Nitrogen cycling under the snow may also be important in supplying nitrogen to plants. We actually know very little about the controls on microbial activity in freezing and frozen soils. This project is part of the ATLAS (Arctic Transitions in the Land-Atmosphere System) program; a component of the NSF Polar Programs, Land-Atmosphere-Ice Interactions program. This is a large, interdisciplinary program focused on understanding the Arctic as an integrated system, with strongly interacting physical and biological components.

In California a major program is targeted at understanding the functioning of California annual grassland oak savanna/woodland ecosystems. Within this larger direction, I have two project thrusts. One is focusing on plant soil interactions and how changing plant communities interact with changing soil processes, particular nitrogen cycling. In particular we are interested in the effect of the annual grasses that invaded California starting over 100 years ago. How much of their success is through changing soil conditions? We are working with Dr. Jim Reichman, Eric Seabloom, and Oliver Chadwick on this work. The other thrust is understanding how stress (drying/rewetting) and resource availability through the soil profile regulate microbial diversity, community composition, and community function. This project is basic microbial ecology and includes work using molecular tools to understand the dynamics of specific microbial populations.

Grants & Funding

  • Microbial and hydrological control of the N flush at the summer-winter seasonal transition. Kearney Foundation of Soil Science. 2007. $157,446. 2 years. PI.
  • Dry Season Biogeochemistry of California ecosystems. NSF. 2007. $512,948. 3 Years. PI.
  • Resource and Stress Interactions in Regulating Microbial Communities in a California Grassland Soil. NSF. 2005. $400,000. 3 Years. Co-PI.
  • Microbes and Ecosystems: Working group at the National Center for Ecological Analysis and Synthesis. 2004. 1 year. PI.
  • The implications of exoenzyme activity on C flow and microbial carbon and nitrogen limitation in soil. Kearney Foundation. 2004. $111,000. 3 years. PI.
  • The bugs of winter: microbial control of soil biogeochemistry during the Arctic cold season. NSF. 2004. $505,833. 3 years. PI.
  • CRB: The role of seed limitation, resource competition, and community complementarity in invasions and restoration. 2002. $364,197.
  • Coupling of carbon and water cycles in a cold, dry ecosystem: Integrative physical, chemical, and biology processes and their controls on CO2 exchange. 2002. $1.7 Million
  • Land-Water Interactions at the Catchment Scale: Linking Biogeochemistry and Hydrology. NSF. 2002. $1.6 Million total
  • Soil organic matter does not break itself down- the implications of exoenzyme activity on C flow and microbial carbon and nitrogen limitation in soil. Kearny Foundation. 2001. $70,000.
  • Microbial and hydrological controls of nitrogen losses from alpine and chaparral ecosystems during seasonal transitions. NSF. 2001. $795,000. 3 years. Co-PI.
  • Santa Barbara Coastal LTER. NSF. 1999. $4,200,000 total. 6 years. Co-I.
  • Amino acids in the N economy of Arctic tundra communities. Mellon Foundation. 1999. $298,000. 3 years. PI.
  • Linking Resource and stress gradients to microbial community composition and function through the soil profile of a California annual grassland at the Sedgwick Reserve. NSF Microbial Observatories Program. 1999. $664,000. 4 years. PI.
  • Winter C-flux in Arctic ecosystems under changing climate: effects of soil carbon and active layer dynamics. NSF (ARCSS-LAII). 1998. $1,345,000. 5 years. PI.

Selected Publications

  • Wallenstein, M. McMahon, S., and J. Schimel. 2007. Bacterial and fungal community structure in Arctic tundra tussock and shrub soils. FEMS Microbiology Ecology. 59 (2): 428-435.
  • Schimel, J.P., T.C. Balser, and M. Wallenstein. 2007. Microbial stress-response physiology and its implications for ecosystem function. Ecology. In press.
  • Numata, I., Chadwick, O.A., Roberts, D.A. Schimel, J.P., Sampaio, F.F., Leonidas, F.C., and Soares, J.V. 2007. Temporal nutrient variation in soil and vegetation of 1 post-forest pastures as a function of soil order, pasture age, and management, Rond ônia, Brazil. Agriculture, Ecosystems and Environment. 118: 159-172.
  • Fierer, N., B. P. Colman, J. P. Schimel, and R. B. Jackson. 2006. Predicting the temperature dependence of microbial respiration in soil: A continental-scale analysis, Global Biogeochem. Cycles, 20, GB3026, doi:10.1029/2005GB002644.
  • Schimel, J.P., J. Fahnestock, G. Michaelson, C. Mikan, C.-L. Ping, V.E. Romanovsky, and J. Welker. 2006. Cold-season production of CO2 in Arctic soils: can laboratory and field estimates be reconciled through a simple modeling approach? Arctic, Antarctic, and Alpine Research. 38: 249-256.
  • Li, X., T. Meixner, J.O. Sickman, A.E. Miller, J.P. Schimel, and J.M. Melack. 2006. Decadal-scale dynamics of water, carbon and nitrogen in a California chaparral ecosystem: DAYCENT modeling results. Biogeochemistry. 77: 217-245.
  • Schimel, J.P. and F.S. Chapin III. 2006. Microbial processes in the Alaskan boreal forest. In: Alaska's Changing Boreal Forest. Chapin, F.S. III, M.W. Oswood, K. van Cleve, L.A. Viereck, and D.L. Verbyla (Eds.) Oxford University Press. Pp. 227-240.
  • Chapin, F.S. III, A.D. McGuire, R.W. Ruess, M.W. Walker, R. Boone, M. Edwards, B. Finney, L.D. Hinzman, J.B. Jones, G.P. Juday, E.S. Kasischke, K.Kielland, A.H. Lloyd, M.W. Oswood, C.-L. Ping, E. Rexstad, V. Romanovsky, J. Schimel, E. Sparrow, B. Sveinbjornsson, D.W. Valentine, K. Van Cleve, D.L. Verbyla, L.A. Viereck, R.A. Werner, T.L. Wurtz, and J. Yarie. 2006. Summary and synthesis: Past and future changes in the Alaskan boreal forest. In: Alaska's Changing Boreal Forest. Chapin, F.S. III, M.W. Oswood, K. van Cleve, L.A. Viereck, and D.L. Verbyla (Eds.) Oxford University Press. Pp. 332-338.
  • Miller, A.E., J.P. Schimel, T. Meixner, J.O. Sickman, and J.M. Melack. 2005. Episodic rewetting enhances carbon and nitrogen release from chaparral soils. Soil Biology & Biochemistry. 37: 2195-2204.
  • Chapin, F. S. III, M. Sturm, M. C. Serreze, J. P. McFadden, J. R. Key, A. H. Lloyd, A. D. McGuire, T. S. Rupp, A. H. Lynch, J. P. Schimel, J. Beringer, W. L. Chapman, H. E. Epstein, E. S. Euskirchen, L. D. Hinzman, G. Jia, C. L. Ping, K. D. Tape, C. D. C. Thompson, D. A. Walker, and J. M. Welker. 2005. Role of Land-Surface Changes in Arctic Summer Warming. Science 310: 657-660.